You may have to pay a charge to cover the costs of regulating your activity. The amount you pay depends on:
the activity you carry out
the regulations that apply to you
The Environment Agency consults with customers before making any changes to their charges. Environment Agency charges are approved by government ministers.
Changes to Environment Agency charging
The Environment Agency regularly review their charges to make sure they reflect their costs.
If they think that charges need to change, they consult with customers first. Then they publish the consultation responses to explain how they addressed customer comments when setting their new charges.
There are extra (supplementary) charges that some customers need to pay on top of the fixed application and annual subsistence charges.
These supplementary charges will only apply if the Environment Agency needs to do extra or unusual regulatory work. This could either be when they determine a permit application or after a permit has been issued.
Charges for this extra work will either be a fixed cost or calculated on a time and materials basis.
You will pay a fixed cost supplementary charge when extra work is needed to support a permit application. For example, at some sites the Environment Agency will need to assess an odour management plan, or for intensive farming installations, a dust and bio-aerosols management plan.
Operators with a waste transfer or treatment permit will pay a fixed cost supplementary charge in the first year of operations.
You will pay time and materials supplementary charges when it is hard to predict the amount of work the Environment Agency will need to do. This is so the hourly costs of Environment Agency officers and the equipment involved can be recovered in full.
Time and materials supplementary charges will apply in the following cases, where extra work is needed to:
determine a permit application – for example, for sites of high public interest (£100 per hour)
bring a site with a permit back into compliance after an unplanned event – such as a pollution incident or suspension notice (£100 per hour)
assess or approve information submitted by the operator to meet a condition in their permit – for example, if you need to produce an odour management plan or fire prevention plan after your permit has been issued (£100 per hour)
investigate and resolve waste activities not operating with a permit or exemption required under the Environmental Permitting Regulations (EPR) (or Environmental Protection Act) – for example, interventions required to bring activities into compliance with environmental regulations or stop the waste operation from continuing (£100 per hour)
Environmental permitting: water industry enforcement levy
There is an additional water industry enforcement levy that some customers will need to pay on top of the fixed application charges, annual subsistence charges and supplementary charges.
The hourly rate for work related to COMAH sites is £264 an hour.
The Environment Agency also charges to recover the costs of their work exercising external emergency plans. These charges are passed on to operators through their local authority. The charge is £100 an hour.
The Environment Agency has a discretionary service that provides formal definition of waste opinions. Customers pay an initial fee of £780 when they submit a request for a definition of waste opinion. This is equivalent to 6 hours work at £130 an hour. This is the minimum amount of time they need to complete an initial review.
The Environment Agency will then provide a cost estimate of further work needed to complete a full technical and legal assessment.
The Environment Agency has a discretionary service that provides marine licensing advice. This is the same approach they take for planning application advice.
They offer a free preliminary opinion. The charge for further technical advice is offered as a discretionary service at £115 an hour.
Planning advice
The Environment Agency charges £115 an hour for their optional planning advice service.
Applicants should set up a written agreement with the Environment Agency for the advice services they need. This is so applicants can get more detail about the services and what they’ll need to pay.
For services related to a development consent order, the charges will apply with or without a written agreement.
a £56 registration charge to register one or more waste exemptions on a site
a ‘compliance charge’ for each waste exemption – this is to cover the costs of checking compliance with the exemption conditions
Waste exemptions come under one of 4 compliance charge bands. There’s a discounted charge for additional registered exemptions in bands upper, 1 and 2.
We use the Water Resources Act 1991 (SZ161) to recover costs for water pollution in some situations. The hourly rate relating to water pollution response and recovery work is £100 per hour.
Since 1 June 2024, for pollution incidents at water and sewerage company EPR permitted discharge sites:
we no longer recharge our costs in responding to less significant (category 3 and category 4) incidents, but instead recover our costs through the annual subsistence fees for that particular permit
for significant or severe (category 1 and 2) incidents, we continue to use time and materials (for unplanned events) to recharge at £100 per hour
for all other incidents, we continue to use the Water Resources Act 1991 (SZ161) to recover our costs
When you send an application to the Environment Agency you need to pay the application charge when you apply. For example this could be an application:
for a new permit, licence or registration
to vary or surrender an existing permit
For annual subsistence charges, or other supplementary charges (fixed cost or calculated on a time and materials basis), the Environment Agency will send you an invoice. You must pay the invoice straight away unless the Environment Agency has agreed you can spread payment, for example by Direct Debit.
Most annual invoices are sent out in April each year.
Time and materials charges are invoiced in arrears.
How to pay Environment Agency charges
You can pay in a number of different ways, by:
Direct Debit (preferred method)
electronic bank transfer
card (not American Express)
cheque
If you have received an invoice it will include details of how to pay. A Direct Debit mandate will be included so you can set up a Direct Debit.
If you are making an application, the guidance to the form will tell you how to pay.
Include an Environment Agency reference number or permit number with your payment. This will make sure your payment can be identified and matched to your application or invoice.
If you want to pay by electronic bank transfer you must use the correct unique reference number. Details of which reference number to use are in the guidance that explains how to apply for a permit or licence.
VAT
The Environment Agency charges VAT on some of the optional services they offer. Where VAT does apply, it will be shown next to the charge on your invoice.
If it’s not an optional service, such as environmental permits and licences, VAT does not apply.
Customer purchase orders
The Environment Agency does not accept purchase orders from customers and will not quote purchase order numbers on their invoices. You will need to find an alternative way of processing your payment if you normally rely on a purchase order number to release a payment.
Added in section 'Changes to Environment Agency charging' link to updated charges to reflect the outcome of the recent cost of service consultation.
1 July 2025
Updated the fees in the 'COMAH charges', 'Definition of waste service charges', 'Marine licensing advice charges' and 'Planning advice' sections. Updated the 'Optional advice services' section to add that this includes voluntary remediation.
Added sections on 'Fluorinated gases and ozone-depleting substances charges', 'Radiation (Emergency Preparedness and Public Information) Regulations (REPPIR) charges', 'Waste exemption charges' and 'Water pollution charges'. Updated the 'Environmental permitting: supplementary charges' section to add in time and materials supplementary charges.
1 April 2024
Updated the 'Planning advice' section to explain where charges apply and linked to more guidance on these services.
1 April 2022
Added a link to the 'Water resources charge proposals from April 2022' consultation response under 'Changes to Environment Agency charging'. Added updated references to water resources charges as new charges apply from 1 April 2022. Updated the link under Environmental permitting charges to the 'Environment Agency (Environmental Permitting and Abstraction Licensing) (England) Charging Scheme 2022' .
5 November 2021
Added a link to the Environment Agency Greenhouse gas emissions charging scheme and removed links to the EU ETS charging scheme and the UK ETS charging scheme.
1 April 2021
Added links to the 2021 consultation response and the UK emissions trading scheme (UK ETS) charges.
24 April 2020
We have added information about what to do if you have difficulties paying your invoice on time because of coronavirus. You may be able to set up a payment plan.
1 April 2019
Updated to include information about recent changes to fees and charges.
9 January 2019
Updated links to the national navigation (boat registration) charging schemes.
7 November 2018
We have added a link to the national navigation (boat registration) charging schemes.